HPC@UNM
Computing Environment
Table of Contents
- Accounts & Allocations
- Account Requests
- Project Requests & Allocations
- Special requests
- Machines & Systems
- Systems Map
- Network Configuration
- List of Machines
- Software
- Applications
- Software Documentation
- HPC@UNM Documentation
- Applications
- Compilers
- Communication Libraries
- Linux Supercluster Reference Card
- GnuPG Reference Card
- Makefiles
- Schedulers
- Numerical Libraries
- Performance Monitors and Optimization
- User Guides- LosLobos, Roadrunner,
Blackbear, Truchas
- Axiom
- CDE
- Condor
- Connect
- Debian
- Emacs
- Linux
- Loadleveler
- MPICH-GM
- Makefile
- Nedit
- Queuing
- SSH Keys
- User Services
- HPC@UNM Announcements Mailing List
- Anonymous FTP
- Secure Access to HPC@UNM Systems
- Linux
- Email
- SSH
- Web
- HPC@UNM uses the Albuquerque Integrated Reporting System (AIRS)
for managing accounts and allocations.
***** NOTE *****
- The HPCERC hardware configuration centers around several IBM
Linux clusters. These systems are supported by a network of communications
devices, a mass storage system, visualization hardware, file servers,
PCs, Macintoshes and peripherals.
The complete list of systems including their compilers, schedulers,
and user guides is located at http://www.hpc.unm.edu/docs/systems.html
- External Connectivity
- T3 connection to the Abilene network and a T3 connection
to the Internet backbone, with each connection offering transmission
speeds of up to 45 megabits of data per second.
- Internal Connectivity
- Gigabit ethernet backbone & fast ethernet (100 Mbps)
- The nodes in each SP system are internally connected within
themselves by a high performance switch (40MB/sec).
- SP external disk drives are connected to general purpose
machines by SCSI (10MB/sec).
- The HPCERC Visualization Lab includes a number of SGI machines
(indigo, indy, onyx2) used primarily by onsite visitors/researchers
or local users.
- The HPCERC employs a number of other machines for various purposes:
- File servers
- Control workstations
- Training / Workshop
- DNS, NIS, Internal-only news server
- WWW and anonymous FTP server
- Mail servers
- Testing
- Guest machines
- Staff machines
- other special purposes
- Most of these machines are inaccessible to users. Users should
not attempt use any machine which is not approved for public use
unless otherwise directed.
- The HPC@UNM offers a number of software applications in the following
categories:
- System Software
- Message Passing Libraries / Parallel Tools
- Compilers / Preprocessors / Debuggers
- Math Subroutine Libraries
- Image Processing / Visualization / Graphics
- Molecular Modeling / Quantum Chemistry
- Computational Fluid Dynamics / Electrical and Mechanical
Engineering
- UNIX and Local Utilities / Information Software
- Documentation for software installed on the general purpose
systems can include any of the following:
- Info pages
- Man pages
- Read me files
- PostScript documents
- On-line help (internal to the application)
- HTML documents
- InfoExplorer (IBM's on-line manuals)
- Web links to Vendor materials
- For documentation that is included with the package distribution,
be sure to check its install directory. The HPC@UNM does not maintain
a central repository of all software documentation.
- Consult vendor WWW servers. Most software vendors have web pages
which include product information and documentation.
| IBM
Software Documentation
|
WWW Resources
The BEST place for documentation about IBM software
products including the parallel environment, AIX operating system,
hardware, technical reports and more, is located on IBM's various
web pages. Some starting points:
- SP Resources
- probably the most complete source for SP information of all
types
- IBM
Tech Resources - good place for technical reports and "internals"
documentation.
- IBM RS/6000 - covers
the entire RS/6000 product line
- IBM's homepage - if you can't
find it anywhere else, this is the launching point.
Hardcopy
- Ordering IBM Manuals: see the Services and Support
section on
IBM's home page
- Many IBM Manuals are available free of charge by download from
the various IBM web pages cited above.
InfoExplorer
- InfoExplorer provides an ascii or X-based utility for accessing
most of IBM manuals while you are logged into an HPC@UNM SP machine.
- The following IBM manuals in InfoExplorer format:
| IBM PRODUCT
| X COMMAND
| ASCII COMMAND
|
| AIX InfoExplorer
| info
| info -a
|
| XL FORTRAN
| info -l xlf
| info -a -l xlf
|
| XL C Compiler
| info -l c
| info -a -l c
|
| XL C++ Compiler Set
| info -l cset
| info -a -l cset
|
| LoadLeveler
| info -l LoadL
| info -a -l LoadL
|
| ESSL
| info -l essl
| info -a -l essl
|
| PESSL
| info -l pessl
| info -a -l pessl
|
| Parallel Environment
| info -l pe
| info -a -l pe
|
| PVMe
| info -l pvm3
| info -a -l pvm3
|
| SP2 Systems Support
| info -l sp2
| info -a -l sp2
|
- Instructions for using IBM's InfoExplorer are available.
- The HPC@UNM is continually ordering and installing new software
packages that will meet its users needs. We strive to keep existing
software up to date. Periodically we review packages for usefulness
and remove any that are outdated or unused.
- All users are encouraged to send suggestions for software acquisitions,
the on-line software pages and documentation to the User Services
Consultants.
- Please send suggestions by email to webmaster@hpc.unm.edu.
- Nearly everything users need to know about the HPC@UNM can be
found on the Center's WWW server, located at:
http://www.hpc.unm.edu
- Important links to check out:
- What's New - News
and information posted daily
- Technical Documentation
- Main page for documentation topics
-
Training - Workshop schedules and registration, links
to workshop tutorials and exercises.
- Accounts & Access - Different
types of accounts and how to obtain one; how to access the
HPC@UNM systems, including Secure Access.
- Resource Limits - CPU and disk limits,
scratch file space.
- Password Policy
- Help Desk - How to contact the Help
Desk, 24x7 coverage, Help Desk hours and technical consulting.
GAMESS,
HONDO, GAUSSIAN, NWChem, Molden, MD Poly, CACTUS,
ZEUS-MP,
AIPS++, PAPI,
PCL, Flatland,
OpenDX,
AVS
| Name |
Applications |
Installed On: |
| Chemistry |
GAMESS,
HONDO, NWChem, Molden, MD Poly |
Roadrunner,
LosLobos, Azul |
| Climate and Weather Modelling |
RAMS, NCAR Graphics |
|
| Astrophysics, Computational Physics |
CACTUS,
ZEUS-MP,
AIPS++ |
Roadrunner,
LosLobos, Azul,
BlackBear |
| Performance Counters |
PAPI,
PCL, Linux-counters |
Roadrunner,
LosLobos, Azul,
BlackBear |
| Scientific Visualization |
Flatland, OpenDX,
AVS |
AIX |
Compliers can run on many systems. Click on the complier
to learn more.
| Compiler |
Description |
Languages |
Machines |
| GNU |
The GNU Project was launched in 1984 to develop
a complete Unix-like operating system which is free software:
the GNU system. |
F77, C, C++ |
Roadrunner,
LosLobos, Azul,
BlackBear, Nambe,
Truchas |
| PGI |
Portland Group compilation, debugging, and optimization
system. |
F77, F90, HPF, C, C++ |
Roadrunner, LosLobos,
Azul, BlackBear
|
| NAG |
|
F90/95 |
|
| Library |
Description |
Languages |
Machines |
| MPICH-GM |
Documentation written by Christopher Jordan. |
F77, F90, C |
Roadrunner,
LosLobos, Azul,
BlackBear |
| MPICH-TCP |
Documentation written by Patricia
Kovatch |
F77, F90, C |
Roadrunner,
LosLobos, Azul,
BlackBear |
| Name |
Description |
Installed On: |
| BLAS |
BLAS (Basic Linear Algebra Subroutines) The BLAS
are building blocks for constructing efficient and portable
linear algebra software for high-performance computers. |
Roadrunner,
LosLobos, Azul,
BlackBear |
| BLACS |
The BLACS exist in order to make linear algebra
applications both easier to program and more portable. It is
for this reason that the BLACS are used as the communication
layer of ScaLAPACK. |
Roadrunner,
LosLobos, Azul,
BlackBear |
| ScaLAPACK |
ScaLAPACK is a library of high performance linear
algebra routines for distributed memory MIMD computers. |
Roadrunner,
LosLobos, Azul,
BlackBear |
| FFTw |
FFTW is a free collection of fast C routines for
computing the Discrete Fourier Transform in one or more dimensions. |
Roadrunner,
LosLobos, Azul,
BlackBear |
| PETSc |
PETSc provides a rich environment for modeling
scientific applications as well as for rapid algorithm design
and prototyping. |
Roadrunner,
LosLobos, Azul,
BlackBear |
| LAPACK |
LAPACK is a library of Fortran 77 subroutines
for solving the most commonly occurring problems in numerical
linear algebra. It has been designed to be efficient on a wide
range of modern high-performance computers. |
|
| Linux Supercluster Reference
Card
|
Linux Supercluster Reference Card
Condor, PBS
| Performance Monitors
and Optimization
|
PAPI, Linux-counters,
MILC, ARPI3D
IRIX
MPICH - MPICH is a freely available, portable implementation of
MPI, the new Standard
for message-passing libraries. (HTML) Postscript
(1,347 Kb), (compressed
Postscript (496 Kb) ) or PDF (1,172 Kb)
| Computing Security -
General Policy
|
HPC@UNM constantly inspects its systems and networks according to
the HPC@UNM Security and Account Usage Policy.
| Guidelines for Acknowledging
Support Policies
|
An acknowledgement of UNM-Alliance support must appear
in publications of any material, whether copyrighted or not, based
on or developed with resources of the University of New Mexico and
the Alliance.
Suggested Wording
We would like to thank the University of New Mexico for access
to their Albuquerque High Performance Computing Center. This work
utilized the UNM-Alliance Supercluster.
Submitting Copies
Copies of technical reports and publications using HPC@UNM resources
should be sent to HPC@UNM with the grant number listed with your
login information.
| Services:
HPC@UNM Announcements
Mailing List
|
- HPC@UNM offers a moderated email Mailman service. Users will
be kept receive timely information about changes to HPC@UNM machines.
It includes information about configuration changes, downtimes,
important events and other topics of potential interest to those
using the HPC@UNM computing resources.
- To subscribe:
Anonymous FTP is closed for security reasons. Please contact help@hpc.unm.edu
for special requests.
- HPC@UNM uses secure shell (ssh).
- HPC@UNM supports the following ssh clients: 1) openssh for Unix,
2) putty for Windows
- Other ssh clients may work. They are not supported by HPC@UNM.
Your milage may vary.
- HPC@UNM currently supports PINE and Netscape email clients.
SSH:
Users must use secure-shell when connecting to other HPC@UNM systems
once logged in.
% ssh nambe.hpc.unm.edu
% ssh blackbear.hpc.unm.edu
% ssh loslobos.alliance.unm.edu
% ssh roadrunner.alliance.unm.edu
Research and distribution projects are often posted to the HPC@UNM´s
public web as separate directories. Please contact the Webmaster
to discuss hosting your own web site.
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